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    si:dkeyp-32g11.8 si:dkeyp-32g11.8 [ Danio rerio (zebrafish) ]

    Gene ID: 794319, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:dkeyp-32g11.8provided by ZNC
    Official Full Name
    si:dkeyp-32g11.8provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-160114-71
    See related
    Ensembl:ENSDARG00000105358 AllianceGenome:ZFIN:ZDB-GENE-160114-71
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (8437206..8438596, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (8191248..8192611, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene jacalin 1 Neighboring gene natterin-like protein Neighboring gene jacalin 4 Neighboring gene hypothetical protein LOC564481

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    natterin-like; natterin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386715.1 → NP_001373644.1  natterin-like

      Status: VALIDATED

      Source sequence(s)
      CR382283
      UniProtKB/TrEMBL
      A0A140LH60, A0A8M1Q151
      Conserved Domains (3) summary
      cd09302
      Location:15 → 139
      Jacalin_like; Jacalin-like lectin domain
      cd10140
      Location:194 → 245
      PFM_aerolysin_family; putative membrane-spanning region [structural motif]
      cl40431
      Location:146 → 313
      PFM_aerolysin_family; pore-forming module of aerolysin-type beta-barrel pore-forming proteins

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      8437206..8438596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001332416.5 → XP_001332452.2  natterin-like protein

      UniProtKB/TrEMBL
      A0A140LH60
      Related
      ENSDARP00000142590.1, ENSDART00000173054.2
      Conserved Domains (3) summary
      cd09302
      Location:15 → 139
      Jacalin_like; Jacalin-like lectin domain
      cd10140
      Location:194 → 245
      PFM_aerolysin_family; putative membrane-spanning region [structural motif]
      cl40431
      Location:146 → 313
      PFM_aerolysin_family; pore-forming module of aerolysin-type beta-barrel pore-forming proteins
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases